# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "dynafluxr" in publications use:'
type: software
license: GPL-2.0-only
title: 'dynafluxr: Retrieve Reaction Rate Dynamics from Metabolite Concentration Time
  Courses'
version: 1.0.1
doi: 10.32614/CRAN.package.dynafluxr
abstract: Reaction rate dynamics can be retrieved from metabolite concentration time
  courses. User has to provide corresponding stoichiometric matrix but not a regulation
  model (Michaelis-Menten or similar). Instead of solving an ordinary differential
  equation (ODE) system describing the evolution of concentrations, we use B-splines
  to catch the concentration and rate dynamics then solve a least square problem on
  their coefficients with non-negativity (and optionally monotonicity) constraints.
  Constraints can be also set on initial values of concentration. The package 'dynafluxr'
  can be used as a library but also as an application with command line interface
  dynafluxr::cli("-h") or graphical user interface dynafluxr::gui().
authors:
- family-names: Sokol
  given-names: Serguei
  email: sokol@insa-toulouse.fr
repository: https://sgsokol.r-universe.dev
commit: 2f55e54a64957ecc82c4213a98788e1f01c935fc
date-released: '2025-07-10'
contact:
- family-names: Sokol
  given-names: Serguei
  email: sokol@insa-toulouse.fr